Introduction
To gain a comprehensive understanding of drug resistance and virulence
factors (VF) in the context of respiratory diseases, we performed analysis of
antibiotic
resistance (AR) and virulence factors in HLMA by using
ShortBRED ,
with the Comprehensive Antibiotic Resistance Database (CARD) and Virulence Factors
Database (VFDB).
Workflow
-
Step 1: Please select a dataset or directly search a datasete.g. PRJEB7248
-
Step 2: Please select a drug resistance analysis
Culture-independent detection and characterisation of
Mycobacterium tuberculosis and M. africanum in sputum samples using shotgun
metagenomics on a benchtop sequencer.
Nr. of samples:
98
Body sites:
Lung
Country region:
USA
Instrument model:
NextSeq 500
Sequencing strategy:
mNGs
Center name:
Children's National Medical
Center
Healthy status:
CF
Tab. 1 Summary of antibiotic
resistance (AR) in PRJEB7248 .
| # | runCode | Antimicrobial resistance profile | Confers resistance to | Phenotype ARO | Number of detected AR genes | Number of markers | Number of reads | Phenotype description |
|---|
Tab. 2 Summary of the abundance
of antibiotic
resistance(AR) observed in PRJEB7248 .
| # | runCode | Peptide Marker | Classification | Confers Resistance To | Confers-Resistance-To ARO | Phenotype ARO | Gene ARO | Gene Annotation Depth | Combined Abundance | Abundance | Normalized Abundance |
|---|
